Payroll Audit Techniques

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Join us for an essential webinar tailored for payroll professionals looking to strengthen or establish effective audit methods across key payroll functions. This session explores critical components such as payroll records, funding details, tax documentation, and reconciliations. Expert presenters will emphasize the importance of consistent auditing practices, with a focus on quarterly and year-end reviews, as well as strategies for conducting thorough second reviews and maintaining clear, effective communication with employees to ensure payroll accuracy and compliance.

Throughout this webinar, you will gain a deeper understanding of payroll auditing methods and how to carefully examine data to identify and resolve inaccuracies. The session highlights practical approaches to auditing payroll records, maintaining data integrity, and embedding regular audit practices into your workflow. By applying these techniques, you can proactively address issues, improve accuracy, and uphold high standards of payroll management.

Your Benefits For Attending

  • Understand various payroll auditing methods
  • Learn how to scrutinize information to identify and correct inaccuracies
  • Gain insights into auditing payroll records to ensure thorough data accuracy
  • Discover the importance of regular audits and how to effectively integrate them into payroll processes
  • Learn best practices for conducting second reviews and resolving issues promptly

Attending this webinar will equip you with practical tools and confidence to enhance your payroll auditing processes, helping you reduce errors, ensure compliance, and maintain a high level of accuracy in your organization’s payroll operations.

Level: Beginner
Format: Live webcast
Instructional Method: Group: Internet-based
NASBA Field of Study: Taxes (2 hours)
Program Prerequisites: None
Advance Preparation: None

  1. Introduction
  2. Agenda 00:03:37
  3. Why Payroll Audits Matter 00:07:47
  4. Payroll Audit Universe 00:14:46
  5. Audit Against What? 00:25:46
  6. Risk-Based Audit Model 00:33:33
  7. Audit Methods 00:43:20
  8. Data Security in an Audit Requirement 00:57:51
  9. Audit Cadence 01:06:25
  10. Payroll-In Controls 01:14:54
  11. Flux/Variance Report – Payroll’s Early Warning System 01:22:16
  12. Employee Master Data Audit 01:28:12
  13. Time & Attendance Audit 01:34:51
  14. Payroll-Out Controls 01:38:55
  15. Bank, ACH, and Cash Requirements - 01:39:54
  16. GL Reconciliation - Skipped
  17. Benefits & Taxes - Skipped
  18. Benefits Deductions to Invoices - Skipped
  19. Pre-Tax vs Post-Tax Codes - Skipped
  20. 2026 Tax Refresher - 01:40:01
  21. Tax Deposits & Quarterly Audits - Skipped
  22. Year-End Audits - Skipped
  23. Other Payroll Audits - Skipped
  24. Tools and Testing - Skipped:
  25. Sample Testing – Be Intentional - Skipped
  26. Payroll’s Secret Weapon – The Excel Spreadsheet - Skipped
  27. Business Intelligence Dashboard - Skipped
  28. Be on the Lookout For… - Skipped
  29. Corrective Measures - Skipped
  30. Audit Calendar 01:40:38
  31. Key Takeaways / Closing Points 01:44:51
  32. Presentation Closing 01:46:44
  • Christine Stolpe

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Browse previous versions of this webinar series:

  • Payroll Audit Techniques
    Webinar Date: May 28, 2026
    VIEWING
  • Payroll Audit Techniques
    Webinar Date: January 1, 2026
  • 401(k) 00:18:36, 01:07:40, 01:31:24
  • Accounting (ACCG) 00:10:24, 00:23:49, 00:48:30, 01:01:28, 01:39:27, 01:45:54
  • Artificial Intelligence (AI) 00:14:28, 00:40:28, 00:46:18
  • Audits 00:04:08, 00:14:58, 00:23:16, 00:33:34, 00:43:00, 00:52:51, 01:01:24, 01:18:13, 01:21:15, 01:41:13
  • Business Intelligence 00:05:12
  • Credit (CR) 00:23:36
  • Debit (DR) 0023:37
  • Electronic Federal Tax Payment System (EFTPS) 00:20:25
  • Fair Labor Standards Act (FLSA) 01:35:23 
  • Federal Income Tax (FIT) 00:15:40, 00:34:01
  • Federal Insurance Contributions Act (FICA) 0:15:33, 00:20:36, 00:34:02, 00:40:20
  • Federal Unemployment Tax Act (FUTA) 0:20:43
  • Flexible Spending Account (FSA) 01:13:44, 00:29:53, 
  • Form 941 00:24:49, 000:33:56,01:1 
  • Formula 00:34:58, 00:46:12, 00:50:10, 01:10:20
  • Form W-2 00:24:50, 00:31:38, 00:39:37, 00:44:37, 01:12:30
  • Form W-4 00:04:12, 01:28:57, 01:34:10
  • Garnishment 01:07:33
  • General Ledger (GL) 00:23:35, 00:48:31, 01:31:57, 01:39:26
  • Invoice 00:24:53, 01:08:30
  • Manual Audit 00:44:34, 00:45:44
  • Overtime 00:48:34, 01:17:09,  01:23:12, 01:30:04,  01:35:23
  • Pivot Table 00:105:33
  • Reconciliation 00:04:40, 00:48:31, 01:08:06
  • Roth IRA 00:18:39
  • Spreadsheet  00:08:42, 00:14:09, 00:34:43, 00:44:51
  • Vendor 00:26:11, 01:00:28, 01:07:27  01:13:49

401(k): In the United States, a 401(k) plan is the tax-qualified, defined-contribution pension account defined in subsection 401(k) of the Internal Revenue Code.

Accounting (ACCG): A systematic way of recording and reporting financial transactions for a business or organization.

Artificial Intelligence (AI): Artificial intelligence is intelligence demonstrated by machines, as opposed to the natural intelligence displayed by humans or animals.

Audit: A formal examination of an organization's or individual's accounts or financial situation

Business Intelligence (BI): Business intelligence (BI) is the process of using data analysis and technology to help organizations make informed decisions. BI tools collect, analyze, and present data to help identify trends, solve problems, and grow revenue.

Credit (CR): An accounting entry that may either decrease assets or increase liabilities and equity on the company's balance sheet, depending on the transaction. When using the double-entry accounting method there will be two recorded entries for every transaction: A credit and a debit.

Debit (DR): An accounting entry where there is either an increase in assets or a decrease in liabilities on a company's balance sheet.

Electronic Federal Tax Payment System (EFTPS): The Electronic Federal Tax Payment System (EFTPS) is a free service from the U.S. Department of the Treasury. EFTPS is a convenient way to make federal tax payments online or by phone, 24/7.

Fair Labor Standards Act (FLSA): The Fair Labor Standards Act of 1938 29 U.S.C. § 203 is a United States labor law that creates the right to a minimum wage, and "time-and-a-half" overtime pay when people work over forty hours a week. It also prohibits most employment of minors in "oppressive child labor".

Federal Income Tax (FIT): Federal income tax is withheld from each W-2 employee’s paychecks throughout a tax year. FIT tax pays for federal expenses like defense, education, transportation, energy, and interest on the federal debt.

Federal Insurance Contributions Act (FICA): The Federal Insurance Contributions Act is a United States federal payroll contribution directed towards both employees and employers to fund Social Security and Medicare—federal programs that provide benefits for retirees, people with disabilities, and children of deceased workers.

Flexible Spending Account (FSA): A Flexible Spending Account (also known as a flexible spending arrangement) is a special account you put money into that you use to pay for certain out-of-pocket health care costs. You don't pay taxes on this money. This means you'll save an amount equal to the taxes you would have paid on the money you set aside.

Form 941: Federal form 941, also called a quarterly federal tax return, is an IRS return that employers use to report their FICA taxes paid and owed for the period. The IRS uses this form to calculate the amount of employer tax payments made during the year as well as the amount of taxes due at the end of the year.

Form W-2: Form W-2 is an Internal Revenue Service tax form used in the United States to report wages paid to employees and the taxes withheld from them. Employers must complete a Form W-2 for each employee to whom they pay a salary, wage, or other compensation as part of the employment relationship. - Wikipedia (https://en.wikipedia.org/)

Form W-4: Form W-4 (otherwise known as the "Employee's Withholding Allowance Certificate") is an Internal Revenue Service (IRS) tax form completed by an employee in the United States to indicate his or her tax situation (exemptions, status, etc.) to the employer.

Formula: A formula is an expression which calculates the value of a cell.

Garnishment: A legal summons or warning concerning the attachment of property to satisfy a debt

General Ledger (GL): A complete record of the financial transactions over the life of a company.

Invoice: An invoice, bill or tab is a commercial document issued by a seller to a buyer, relating to a sale transaction and indicating the products, quantities, and agreed prices for products or services the seller had provided the buyer. Payment terms are usually stated on the invoice.

Manual Audit: A Manual Audit is a comprehensive review of a Supplier's written safety manual, policies, procedures, and/or safe work practices. The intent of the Audit is to ensure the supplier has established effective processes to protect its employees from reasonably foreseeable harm in accordance with jurisdictional safety requirements and industry-best practices.

Overtime: Overtime is time and a half of what an employee earns for every hour worked over 40 in a workweek. The FLSA salary threshold is the minimum salary employers must pay employees for them to be exempt from overtime wages.

Pivot Table: A report creation tool in Excel that enables you to quickly summarize lists of data into summary reports by clicking checkboxes and dragging fields onscreen.

Reconciliation: Payroll reconciliation is when you compare your payroll register with the amount you're planning to pay out to your employees to confirm those numbers match. The simplest way to think about it is double-checking your math to ensure that you pay your employees correctly. Payroll reconciliation should happen frequently.

Roth IRA: A Roth IRA is an individual retirement account allowing a person to set aside after-tax income up to a specified amount each year. Both earnings on the account and withdrawals after age 59½ are tax-free.

Spreadsheet: Microsoft Excel is a spreadsheet developed by Microsoft for Windows, macOS, Android and iOS. It features calculation or computation capabilities, graphing tools, pivot tables, and a macro programming language called Visual Basic for Applications. Excel forms part of the Microsoft Office suite of software.

Vendor: A vendor is a person or business that supplies goods or services to a company. Another term for the vendor is the supplier. In many situations, a company presents the vendor with a purchase order stating the goods or services needed, the price, delivery date, and other terms.


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Webinar Survey Overall Rating

This webinar received a total of 4 survey responses. Attendees have given an average rating of 4.2 stars out of a possible 5, reflecting the quality and value of the content presented.

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4.2 / 5
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4.0 Stars
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4.8 Stars
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4.5 Stars
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Reviews From Webinar Survey

Our webinars are crafted to deliver exceptional value and insight to business professionals. Below, you'll find genuine feedback from attendees.

Katie M.
June 1, 2026
3.8 / 5
Webinar Rating:
4.0 Stars
Speaker Rating:
3.5 Stars
Do you have any other comments, questions or concerns?
The presenter was very knowledgeable.

Andrea S.
May 29, 2026
3.8 / 5
Webinar Rating:
4.3 Stars
Speaker Rating:
3.0 Stars
Do you have any other comments, questions or concerns?
This should be a 2 part training due to the depth of material

Salena G.
May 28, 2026
4.8 / 5
Webinar Rating:
5.0 Stars
Speaker Rating:
4.5 Stars
Do you have any other comments, questions or concerns?
Awesome training

Carrie M.
May 28, 2026
4.2 / 5
Webinar Rating:
4.3 Stars
Speaker Rating:
4.0 Stars
Do you have any other comments, questions or concerns?
I was very impressed with Christine and would take her class again. She is so knowledgeable and the information was very relevant!

Frequently Asked Questions

Payroll auditing employs two primary methodologies — manual audits and visual audits — each suited to different aspects of the review process. Manual audits involve detailed examination of specific payroll transactions, calculations, and records to verify mathematical accuracy and regulatory compliance, often using spreadsheet-based tools like VLOOKUP or PivotTables to cross-reference data across multiple sources. Visual audits apply pattern recognition to high-level summaries, looking for anomalies — unusual pay amounts, new payees, duplicate payments, or sudden spikes in specific expense categories — that warrant deeper investigation. Effective payroll audit programs combine both approaches, using visual methods to triage where manual scrutiny is most needed. Additional techniques include reconciling payroll totals to general ledger accounts, matching employee headcount to authorized positions, verifying tax withholding calculations against IRS Publication 15-T tables, and confirming that benefit deductions reconcile to carrier invoices. Quarterly and year-end audit cycles are supplemented by continuous monitoring of high-risk areas like new employee additions, direct deposit changes, and expense reimbursements. Documenting audit findings, resolution steps, and preventive measures creates an institutional knowledge base that strengthens the payroll function over time. Aurora Training Advantage offers specialized payroll audit training for practitioners at all experience levels.
Quarterly payroll audits focus on validating that payroll transactions processed during the quarter are accurately reflected in Form 941 filings, general ledger entries, and tax deposit records. The quarterly review should reconcile gross wages, taxable wages, and tax withholdings per the payroll register against the 941 before filing — catching discrepancies before they become IRS notices. Benefit deductions should be reconciled to carrier invoices and 401(k) deferrals confirmed against plan service provider records. Year-end audits have additional complexity because they must ensure that W-2 amounts are accurate across all wage boxes — including taxable fringe benefits, third-party sick pay, and deferred compensation — before W-2s are generated. Common year-end audit checkpoints include verifying that FICA wage bases have been applied correctly, confirming that supplemental wages have been reported in the correct boxes, reviewing year-to-date totals for each employee against payroll register summaries, and reconciling annual 940 filings against quarterly 941 totals. Year-beginning audits update tax tables, verify that new benefit deduction amounts have been implemented correctly, and confirm that any W-4 changes submitted in the prior period have been applied. Building an audit calendar with specific checklists for each cycle ensures nothing is overlooked as the payroll workload intensifies at period-end.
A comprehensive payroll audit examines records across several categories to verify that payroll is being processed accurately, compliantly, and with appropriate documentation. Payroll registers — detailed reports of all earnings, deductions, and taxes for each pay period — are the foundation, providing the source data against which all other records are reconciled. Employee master file records should be reviewed to confirm that pay rates, direct deposit accounts, tax withholding elections, and benefit deductions match authorized documents on file. Tax records, including Form 941s and Form 940, should reconcile to payroll totals for each filing period, with EFTPS payment records confirming timely deposit of all withheld taxes. Vendor invoices from health insurance carriers, 401(k) providers, and garnishment processing agencies should be matched to the corresponding payroll deduction amounts. Time and attendance records for non-exempt employees should be compared to the hours paid in the payroll register to detect unauthorized time entry changes. Direct deposit change records are a high-risk area that should be reviewed against authorization documentation to detect fraudulent account redirection. Funding records confirming that payroll bank accounts were funded correctly and that checks and ACH disbursements match the approved payroll register complete the core audit trail. Retention of these records according to IRS and state requirements is itself a compliance objective of the audit process.
Payroll reconciliation is the process of comparing multiple payroll data sources to confirm they are consistent and accurate — ensuring that what was calculated matches what was recorded, what was deposited, and what was reported. The most fundamental reconciliation compares the payroll register (the detailed calculation of each employee's pay) to the payroll funding amount (the actual disbursement from the bank), confirming that the total net pay plus taxes and deductions equals the gross payroll calculated. Tax reconciliations compare withheld federal, state, and local taxes per the payroll register to the tax deposits made via EFTPS or state payment portals, identifying any shortfall that could trigger IRS penalties for late or insufficient deposits. Benefit reconciliations match employee deductions in the payroll system to insurance carrier and benefits administrator invoices, catching situations where employees are being deducted for coverage they don't have or enrolled in coverage they're not being charged for. General ledger reconciliations confirm that payroll journal entries accurately reflect total compensation expense, employer tax expense, and liability account balances. Regular reconciliations — ideally each pay period rather than only at quarter-end — reduce the scope of corrections needed at filing time and create a clean audit trail that demonstrates rigorous payroll controls to internal auditors, external auditors, and tax authorities.
Communicating payroll audit findings to employees requires balancing transparency and professionalism with appropriate confidentiality. When audits identify errors that affected employee pay — whether underpayments that must be corrected or overpayments that need to be recovered — clear, prompt communication is both legally important and essential for maintaining employee trust. Underpayment corrections should be communicated with an explanation of what was underpaid, the period it covered, and when the correction will appear in their paycheck, accompanied by a corrected pay statement. Recovery of overpayments requires particular care: legal requirements for employee notification and consent before deductions begin vary by state, and the communication should clearly explain the error, the amount to be recovered, and the proposed repayment schedule. Framing these communications professionally and factually — without blame or accusation — protects the employment relationship. For audit findings that don't directly affect employee pay — such as tax reporting corrections or benefit enrollment adjustments — employees who are affected should still receive notification of what changed and why. Documenting all communications related to audit findings creates a record that supports the organization's good faith compliance posture if the issue is later examined by regulators. Training payroll staff on how to handle employee questions about corrections ensures consistent, accurate responses that don't inadvertently create additional concerns.